MersV1, Main, Exploration, bibRecord, 001781

GenomeTester4: a toolkit for performing basic set operations - union, intersection and complement on k-mer lists.

Identifieur interne : 001781 ( Main/Exploration ); précédent : 001780; suivant : 001782

GenomeTester4: a toolkit for performing basic set operations - union, intersection and complement on k-mer lists.

Auteurs : Lauris Kaplinski [Estonie] ; Maarja Lepamets [Estonie] ; Maido Remm [Estonie]

Source :

GigaScience [ 2047-217X ] ; 2015.

RBID : pubmed:26640690

Descripteurs français

KwdFr :
- Analyse de séquence d'ADN (), Animaux, Génome, Génomique (), Humains, Logiciel.
MESH :
- Analyse de séquence d'ADN, Animaux, Génome, Génomique, Humains, Logiciel.

English descriptors

KwdEn :
- Animals, Genome, Genomics (methods), Humans, Sequence Analysis, DNA (methods), Software.
MESH :
- methods : Genomics, Sequence Analysis, DNA.
- Animals, Genome, Humans, Software.

Abstract

K-mer-based methods of genome analysis have attracted great interest because they do not require genome assembly and can be performed directly on sequencing reads. Many analysis tasks require one to compare k-mer lists from different sequences to find words that are either unique to a specific sequence or common to many sequences. However, no stand-alone k-mer analysis tool currently allows one to perform these algebraic set operations.

DOI: 10.1186/s13742-015-0097-y
PubMed: 26640690

Affiliations:

Estonie

Le document en format XML

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GenomeTester4: a toolkit for performing basic set operations - union, intersection and complement on k-mer lists.

GenomeTester4: a toolkit for performing basic set operations - union, intersection and complement on k-mer lists.

Source :

Descripteurs français

English descriptors

Abstract

Links toward previous steps (curation, corpus...)

Le document en format XML

Pour manipuler ce document sous Unix (Dilib)

Pour mettre un lien sur cette page dans le réseau Wicri

Pour générer des pages wiki

	Serveur d'exploration MERS
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